speciesot

Geometric inference of cross-species transcriptome correspondence using Gromov–Wasserstein optimal transport.

Overview figure

Installation

pip install speciesot

Requirements

Python 3.12.7
NVIDIA GPUs or Apple Silicon

Click here to learn how to utilize Apple Silicon’s GPUs (official documentation).

Preprint

Please see the following preprint: Y. Tokuta et al. Geometric inference of cross-species transcriptome correspondence using Gromov–Wasserstein optimal transport. bioRxiv (DOI: 10.1101/2025.10.23.684069)