Species-OT documentation

Geometric inference of cross-species transcriptome correspondence using Gromov–Wasserstein optimal transport． GitHub project is here： yuyatokuta/Species-OT．

README

• speciesot
  • Installation
  • Requirements
  • Preprint

Tutorials

• Dataset 1
  • Initial setup
  • Initialize the Config() class
  • Initialize the Data() class
  • Initialize the SpeciesOT() class
  • Chained Processing
  • End of tutorial
• Dataset 2
  • Initial setup
  • Initialize the Config() class
  • Initialize the Data() class
  • Initialize the SpeciesOT() class
  • Chained Processing
  • Differential expression analysis and selection of Wnt-related genes
  • End of tutorial

API

• API Reference
  • speciesot.speciesot.Config
  • speciesot.speciesot.Data
  • speciesot.speciesot.SpeciesOT

Indices and tables

• Index

• Search Page